|
ppiA
|
| |
| Information
for ppiA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3489090-3489257
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
3489362-3489934
|
-
|
CDS
|
ppiA
|
|
peptidyl-prolyl cis-trans isomerase A (rotamase A)
|
|
3490205-3491386
|
+
|
CDS
|
|
|
putative transport
|
|
| |
Reported regulatory
sites for ppiA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
3490012-3490026
|
|
cpxR
|
transcriptional regulator in 2-component system
|
|
3490117-3490138
|
|
crp
|
cyclic AMP receptor protein
|
|
3490064-3490085
|
|
crp
|
cyclic AMP receptor protein
|
|
3490088-3490114
|
|
cytR
|
regulator for deo operon udp cdd tsx nupC and nupG
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
5.120
|
3490014-3490029 R
|
tcaga TACGTAAAATTAGGTA aaggg
|
cpxR
|
13
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.059
|
3490023-3490045 R
|
tcagg TTACATATATTTCAGATACGTAA aatta
|
cpxR
|
4
|
-
|
|
|
|
|
1.431
|
3490052-3490073 R
|
atttt GATCACGGAATAAAAAGTGATC gtcag
|
crp
|
10
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|