|
ppk
|
| |
| Information
for ppk, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
2620254-2620892
|
+
|
CDS
|
|
|
phosphoribosylglycinamide formyltransferase 1
|
|
2621064-2623130
|
+
|
CDS
|
ppk
|
|
polyphosphate kinase
|
|
2623135-2624676
|
+
|
CDS
|
|
|
exopolyphosphatase
|
|
| |
Reported regulatory
sites for ppk:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.772
|
2620908-2620931
|
attaa AGCGCCAGCTCTGCCGCTGGCGTT tttca
|
-
|
0
|
-
|
|
|
|
|
1.255
|
2621011-2621032
|
tattg CTCGCCATAATATCCAGGCAGT gtccc
|
-
|
0
|
-
|
|
|
|
|
1.109
|
2620932-2620948
|
gcgtt TTTCAATTCACCTGTAA atcgc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|