rbfA
 
Information for rbfA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3309474-3310418
-
CDS
tRNA pseudouridine 5S synthase
3310418-3310819
-
CDS
rbfA
ribosome-binding factor A
3310983-3313655
-
CDS
protein chain initiation factor IF-2
 
Reported regulatory sites for rbfA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.786
3310840-3310859 R
tttaa AAAGGGGCTAACAGCCCCTT ttttg
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.034
3310822-3310839 R
ccctt TTTTGTCAGGAGAATTTA ttatg
-
0
-
0.796
3310882-3310901 R
cttat CAGGTCAACGTGAACAGCCC ttcca
-
0
REP242a (9)
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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