rcsC
 
Information for rcsC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2314197-2314847
+
CDS
positive response regulator for colanic capsule biosynthesis; (sensor; RcsC)
2315047-2317848
-
CDS
rcsC
sensor for ctr capsule biosynthesis; probable histidine kinase acting on RcsB
2318063-2319889
+
CDS
sensor protein AtoS for response regulator AtoC
 
Reported regulatory sites for rcsC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.429
2317898-2317915 R
cacct GAGGCGGAGCTTCGCCCC tttga
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.468
2317877-2317897 R
gcccc TTTGAAATACCTTGCTTCTTT tcgta
-
0
-
1.124
2317853-2317875 R
ctttt CGTACAACCCTGAAAGCCTCGCG ctaca
-
0
-
 
Critical MAP values:
p=0.01
7.30
p=0.05
6.05
p=0.1
5.26
p=0.2
4.60

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