rep
 
Information for rep, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3957857-3958117
-
CDS
orf; hypothetical protein
3958292-3960313
+
CDS
rep
rep helicase; a single-stranded DNA dependent ATPase
3960360-3961844
-
CDS
guanosine pentaphosphatase; exopolyphosphatase
 
Reported regulatory sites for rep:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.684
3958262-3958283
atcct CCCCCCGTTCGAAGATTGAGCA ataca
-
0
-
1.233
3958244-3958260
aaatg CGATTCTGCTACAATCC tcccc
-
0
-
0.754
3958231-3958252
cgcgg TCACATTCAAATGCGATTCTGC tacaa
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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