rfaD
 
Information for rfaD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3790453-3791325
-
CDS
involved in lipopolysaccharide biosynthesis
3791614-3792546
+
CDS
rfaD
ADP-L-glycero-D-mannoheptose-6-epimerase
3792556-3793602
+
CDS
ADP-heptose--lps heptosyltransferase II; lipopolysaccharide core biosynthesis
 
Reported regulatory sites for rfaD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.817
3791572-3791590
ttcgt GTCTGAGATTGTCTCTGAC tccat
-
0
-
1.397
3791547-3791565
ggatg TGATGGTATGATTACAGAC attcg
-
0
-
1.090
3791420-3791439
ggaat ATTGATACTAAAGCACTATT cacat
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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