rfe
 
Information for rfe, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3964032-3965291
+
CDS
transcription termination factor Rho; polarity suppressor
3965531-3966634
+
CDS
rfe
UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA)
3966643-3967692
+
CDS
putative transport protein
 
Reported regulatory sites for rfe:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI ST EC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
7.574
3965309-3965332
ccaaa AACGCCACGTGTTTACGTGGCGTT ttgct
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.175
3965292-3965308
cataa ATTTGTCTTATGCCAAA aacgc
-
0
-
1.175
3965403-3965419
gcatg TTATGCAATTTGCATAT caaat
-
0
-
1.076
3965378-3965394
ttagg AAAATTCCTGGAATTTG ctggc
-
0
-
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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