rhaD

Information for rhaD, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 4090705-4091019 - CDS yiiL EG11865 orf; hypothetical protein 4091029-4091853 - CDS rhaD EG11866 rhamnulose-phosphate aldolase 4092304-4093563 - CDS rhaA EG11867 L-rhamnose isomerase

Reported regulatory sites for rhaD: Genome coordinates Source Transcription factor Transcription factor annotation

Species with an ortholog: ST EC

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 6.425 4092109-4092127 R tcgca TCAGGCATTGATTGCCGGA tgcgg - 0 REP299e (6) REP299f (6) 6.425 4092017-4092035 R tcgca TCAGGCATTGATTGCCGGA tgcgc - 0 REPt299c (6) REP299d (6) 5.461 4092166-4092181 R cttat CCGGCCTACAGGTCGG caata - 0 REP299g (9) 5.461 4092074-4092089 R cttat CCGGCCTACAGGTCGG caaca - 0 REP299e (9) 3.433 4092201-4092219 R tcgca TCAGGCATTGATTGCCGGA tgcgg - 0 REP299g (6) REP299h (6) 3.433 4091926-4091944 R tcgca TCAGGCATTGATTGCCGTG gatgc - 0 REP299a (4) REP299b (6)

Critical MAP values: p=0.01 7.59 p=0.05 6.45 p=0.1 5.76 p=0.2 5.04

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