rho
 
Information for rho, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3963846-3963947
+
CDS
rho operon leader peptide
3964032-3965291
+
CDS
rho
transcription termination factor Rho; polarity suppressor
3965531-3966634
+
CDS
UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA)
 
Reported regulatory sites for rho:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.161
3963637-3963656
aagtg GCGGCAACCAAAGTGGGTGC actgt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.500
3963587-3963607
gaaat ATGGCATCCGTGGTATCCCGA ctctg
-
0
-
2.252
3963680-3963698
gaaag AGTTCCTCGACGCTAACCT ggcgt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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