rne
 
Information for rne, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1139256-1140209
+
CDS
flagellar biosynthesis; hook-filament junction protein
1140405-1143590
-
CDS
rne
RNase E; membrane attachment; mRNA turnover; maturation 5S RNA
1143671-1144045
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for rne:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.666
1143614-1143630 R
tgccc GCAGCTTAGTCGTCAAT gtaag
-
0
-
2.666
1143592-1143608 R
gtaag AATAATGAGTAAGTTAC gatga
-
0
-
1.378
1143633-1143650 R
caccc GGAAAGGCGTTACTTTGC ccgca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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