rnhA
 
Information for rnhA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
234798-235538
+
CDS
orf; hypothetical protein
235535-236002
-
CDS
rnhA
RNase HI; degrades RNA of DNA-RNA hybrids; participates in DNA replication
236067-236798
+
CDS
DNA polymerase III; epsilon subunit
 
Reported regulatory sites for rnhA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.728
236042-236062 R
tagcg GTCATTTATGTCAGACTTGTC gtttt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.635
236004-236020 R
caatt ACAGGAAGTCTACCAGA gatgc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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