rnt
 
Information for rnt, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1725861-1726268
+
CDS
lactoylglutathione lyase
1726371-1727018
+
CDS
rnt
RNase T; degrades tRNA
1727111-1731727
+
CDS
member of ATP-dependent helicase superfamily II
 
Reported regulatory sites for rnt:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.257
1726286-1726309
cgtga ACTCATCGCGCCCGCATCTTTACT gcatc
-
0
-
2.257
1726328-1726351
atatt TGTCATAATGCGCGCTGCAATTTA tccgt
-
0
-
1.147
1726268-1726284
aacta ATCTCCTGCCGGGCGTG aactc
-
0
-
0.229
1726354-1726370
ttatc CGTATTAAGAGAATCAG atgtc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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