rpiR
 
Information for rpiR, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4308686-4309621
-
CDS
putative LACI-type transcriptional regulator
4309680-4310603
-
CDS
rpiR
transcriptional repressor of rpiB expression
4310929-4311378
+
CDS
ribose 5-phosphate isomerase B
 
Reported regulatory sites for rpiR:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.745
4310654-4310671 R
taaaa TAAACTTTATAAATTTTA ttttt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.571
4310727-4310749 R
accag AAAAACAAATAACATCATGTTTT taaac
-
0
-
1.374
4310863-4310881 R
ttgtg ATGTTAATGAATTAAAAAC accca
-
0
-
1.374
4310702-4310720 R
aaact AATTAAATGAAATAAAATT ttaag
-
0
-
 
Critical MAP values:
p=0.01
3.34
p=0.05
2.41
p=0.1
2.01
p=0.2
1.55

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