rplJ
 
Information for rplJ, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4176457-4177161
+
CDS
50S ribosomal subunit protein L1; regulates synthesis of L1 and L11
4177574-4178071
+
CDS
rplJ
50S ribosomal subunit protein L10
4178138-4178503
+
CDS
50S ribosomal subunit protein L7/L12
 
Reported regulatory sites for rplJ:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.813
4177388-4177408
caggc CTCCGTCGAAGACCGCAGGAG tttcg
-
0
-
4.107
4177425-4177442
actta ATCCCCTGCGTAGACGGT gacag
-
0
-
3.832
4177344-4177366
tagcg ACGGATAGAAAAGATTTGTTCGT tggag
-
0
IRU17 (15)
3.830
4177267-4177287
actga GTGAGTCGCCAGGAGCATAGC taact
-
0
IRU17 (21)
3.830
4177551-4177571
ctctg GCAAACATCCAGGAGCAAAGC taatg
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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