rplK
 
Information for rplK, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4175322-4175867
+
CDS
component in transcription antitermination
4176025-4176453
+
CDS
rplK
50S ribosomal subunit protein L11
4176457-4177161
+
CDS
50S ribosomal subunit protein L1; regulates synthesis of L1 and L11
 
Reported regulatory sites for rplK:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.309
4175878-4175894
cgatc AAAAAAGCGGCGATTTA atcgt
-
0
-
3.309
4175925-4175941
aatac AATTTCGCGCCTTTTGT tttta
-
0
-
2.553
4176002-4176018
cgtta TTACCCAACTTGAGGAA tttat
-
0
-
1.304
4175972-4175988
ttttt TATATCACGGGGAGCCT ctcag
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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