rplU
 
Information for rplU, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3330503-3330760
-
CDS
50S ribosomal subunit protein L27
3330781-3331092
-
CDS
rplU
50S ribosomal subunit protein L21
3331351-3332322
+
CDS
octaprenyl diphosphate synthase
 
Reported regulatory sites for rplU:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.555
3331137-3331159 R
tcgcg CCCTATTGTGAATATTTATAGCG cactc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.465
3331253-3331272 R
taggg TGATTGTACTGAAAAAATGG cacag
-
0
-
2.465
3331162-3331181 R
aggcg TGCGTTTTGCGTAATATTCG cgccc
-
0
-
2.134
3331332-3331348 R
catcg CAAAAGCCGGGCTTTTC gcccc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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