rpoB
 
Information for rpoB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4178138-4178503
+
CDS
50S ribosomal subunit protein L7/L12
4178823-4182851
+
CDS
rpoB
RNA polymerase; beta subunit
4182928-4187151
+
CDS
RNA polymerase; beta prime subunit
 
Reported regulatory sites for rpoB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.078
4178800-4178817
tcgac TTGTCAGCGAGCTGAGGA accct
-
0
-
4.653
4178533-4178555
agaaa TCAGGCTGATGGCTGGTGACTTT ttagt
-
0
-
4.653
4178556-4178578
acttt TTAGTCACCAGCCTTTTTGCGCT gtaag
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.326
4178598-4178618
gcgtt TCACACTGTTTGACTACTGCT gtgcc
-
0
-
3.326
4178692-4178712
cgcaa TGAAATGGTTTAAGCGTGATA gcaac
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

Click here to go back