rpoC
 
Information for rpoC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4178823-4182851
+
CDS
RNA polymerase; beta subunit
4182928-4187151
+
CDS
rpoC
RNA polymerase; beta prime subunit
4187364-4187903
+
CDS
heat shock protein htrC
 
Reported regulatory sites for rpoC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.786
4182866-4182887
aaaca GGTCACTGCTGTCGGGTTAAAA cccgg
-
0
-
3.786
4182904-4182925
attgt GCTAACTCCGACGGGAGCAAAT ccgtg
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.796
4182849-4182865
acgag TAATTCTCGCTCAAACA ggtca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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