rpoD
 
Information for rpoD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3208748-3210493
+
CDS
DNA biosynthesis; DNA primase
3210688-3212529
+
CDS
rpoD
RNA polymerase; sigma(70) factor; regulation of proteins induced at high temperatures
3212608-3213114
-
CDS
orf; hypothetical protein
 
Reported regulatory sites for rpoD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.917
3210538-3210558
cgaca GCCGCACTGAGAGGCAGCGGC aaata
-
0
-
2.650
3210497-3210514
gattt AACGGCTTAAGTGCCGAA gagcg
-
0
-
2.478
3210670-3210685
gaaat AAGTGTGGATACCGTC ttatg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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