rpoE
 
Information for rpoE, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2706774-2707424
-
CDS
sigma-E factor; negative regulatory protein
2707457-2708032
-
CDS
rpoE
RNA polymerase; sigma-E factor; heat shock and oxidative stress
2708440-2710062
+
CDS
quinolinate synthetase; B protein
 
Reported regulatory sites for rpoE:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.240
2708416-2708437 R
cattt TCTTTGTTTAATTTACTAAACA tggtt
-
0
-
2.240
2708342-2708363 R
tttaa TATTTGTTACAGTTGCTAAACA cgctg
-
0
-
1.550
2708034-2708051 R
tggtt TGGGGAGACTTTACCTCG gatga
-
0
-
1.294
2708045-2708068 R
gatag CGCGTGGAAATTTGGTTTGGGGAG acttt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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