rpsA
 
Information for rpsA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
960424-961107
+
CDS
cytidylate kinase
961218-962891
+
CDS
rpsA
30S ribosomal subunit protein S1
963051-963335
+
CDS
integration host factor (IHF); beta subunit; site-specific recombination
 
Reported regulatory sites for rpsA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.818
961150-961168
acagc GGGTATGTTAAACAACCCC atccg
-
0
-
3.818
961186-961204
gccag GTGGACGTTAAATATAAAC ctgaa
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.681
961124-961145
tgcag TACCCCCGTTGCAATGGAATGA cagcg
-
0
-
0.087
961169-961184
acccc ATCCGGCATGGAGCCA ggtgg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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