rpsF
 
Information for rpsF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4422094-4422369
-
CDS
orf; hypothetical protein
4422696-4423091
+
CDS
rpsF
30S ribosomal subunit protein S6
4423098-4423412
+
CDS
primosomal replication protein N
 
Reported regulatory sites for rpsF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.447
4422669-4422689
aggag GCTGAATAATCCGTAAGGAGC aattc
-
0
-
4.302
4422591-4422612
tacaa GTACTATAACGCGTCATTTTTC agccg
-
0
-
4.302
4422617-4422638
cagcc GACCTTTAACACGTTCCTTGCC tcccc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.115
4422650-4422668
ggatt CGGCTGACCCAGACAGGAG gctga
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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