|
rpsG
|
| |
| Information
for rpsG, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
3469037-3471151
|
-
|
CDS
|
|
|
GTP-binding protein chain elongation factor EF-G
|
|
3471179-3471718
|
-
|
CDS
|
rpsG
|
|
30S ribosomal subunit protein S7; initiates assembly
|
|
3471815-3472189
|
-
|
CDS
|
|
|
30S ribosomal subunit protein S12
|
|
| |
Reported regulatory
sites for rpsG:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
5.016
|
3471785-3471804 R
|
ctccg TTAAGTAAGGCCAAACGTTT taact
|
-
|
0
|
-
|
|
|
|
|
5.016
|
3471739-3471758 R
|
ctcgt AGAGTTTTGGACAATCCTGA attaa
|
-
|
0
|
-
|
|
|
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.239
|
3471720-3471736 R
|
tgaat TAACAACGGAGTATTTC catgc
|
-
|
0
|
-
|
|
|
|
|
2.891
|
3471762-3471782 R
|
tttta ACTTAAATGTCAAACTAAACT cgtag
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
4.80
|
|
p=0.05
|
3.45
|
|
p=0.1
|
2.95
|
|
p=0.2
|
2.42
|
|
|