rpsO
 
Information for rpsO, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3306674-3308878
-
CDS
polynucleotide phosphorylase; cytidylate kinase activity
3309056-3309325
-
CDS
rpsO
30S ribosomal subunit protein S15
3309474-3310418
-
CDS
tRNA pseudouridine 5S synthase
 
Reported regulatory sites for rpsO:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.633
3309359-3309376 R
ggatc GCTGAATTAGAGATCGGC gtcct
-
0
-
4.306
3309408-3309428 R
actgc CGCTTAACGTCGCGTAAATTG tttaa
-
0
-
4.306
3309382-3309402 R
tttaa CACTTTGCGTAACGTACACTG ggatc
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.101
3309330-3309346 R
cattc TATATACTTTGGAGTTT taaaa
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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