rpsU
 
Information for rpsU, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3207171-3208184
-
CDS
putative O-sialoglycoprotein endopeptidase
3208422-3208637
+
CDS
rpsU
30S ribosomal subunit protein S21
3208748-3210493
+
CDS
DNA biosynthesis; DNA primase
 
Reported regulatory sites for rpsU:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
7.530
3208307-3208324
ttcaa AAAAGGCCGCGGTGCTTT acaaa
-
0
-
7.530
3208347-3208364
gcagt AAAATTCCGCACCATTTT gaaat
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.363
3208327-3208346
tttac AAAGCAGCAGCAATTGCAGT aaaat
-
0
-
3.363
3208366-3208385
ttttg AAATAAGCTGGCGTTGATGC cagcg
-
0
-
1.790
3208210-3208233
attac CGCGCAGTGTAGGACCAATGCGGG ttgat
-
0
-
1.790
3208394-3208417
cggca AACCGAATTAATCAAAGGTGAGAG gcaca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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