|
slpA
|
| |
| Information
for slpA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
25207-25701
|
+
|
CDS
|
|
|
prolipoprotein signal peptidase (SPase II)
|
|
25826-26275
|
+
|
CDS
|
slpA
|
|
probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase)
|
|
26277-27227
|
+
|
CDS
|
|
|
control of stringent response; involved in penicillin tolerance
|
|
| |
Reported regulatory
sites for slpA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.348
|
25764-25779
|
atcgt AGGCCGGATAAGGCGT ttacg
|
-
|
0
|
REP2b (16)
|
|
|
|
|
3.348
|
25782-25797
|
cgttt ACGCCGCATCCGGCAA aaatc
|
-
|
0
|
REP2b (14)
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|