slyD
 
Information for slyD, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3475277-3475495
+
CDS
host factor for lysis of phiX174 infection
3475544-3476134
-
CDS
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
3476439-3478244
-
CDS
K+ efflux; NEM-activable K+/H+ antiporter
 
Reported regulatory sites for slyD:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.170
3476233-3476251 R
agtga TCGGGATTTTTCATCCGGA ctagc
-
0
-
2.587
3476137-3476159 R
ccact ATTCTTCCCATGCTCAGGAGATA tcatg
-
0
-
2.547
3476392-3476411 R
aacgt TTTATTGCGGGCGCAAAATG cccgg
-
0
-
2.547
3476167-3476186 R
ggctg CAGAATTCCGCTACAATCTG cgcca
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

Click here to go back