smf_1

Information for smf_1, and also upstream and downstream flanking genes:

Genome coordinates Orientation Gene type Name EcoGene Annotation 3430074-3430382 - CDS smf_2 EG11604 orf; fragment 2 3430436-3431197 - CDS smf_1 EG11604 orf; fragment 1 3431327-3431836 + CDS def EG11440 peptide deformylase

Reported regulatory sites for smf_1: Genome coordinates Source Transcription factor Transcription factor annotation

Species with an ortholog: HI ST EC YP

Predictions with an average map value >= the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment

Predictions with an average map value < the critical MAP value (p=0.05): Avg. MAP Genome coordinates Sequence Site type Overlap (bp) Repeat Model logo Prediction logo Prediction alignment 4.598 3431271-3431287 R ttatt TCTTCTATTCTAGACAA atccc - 0 - 4.519 3431288-3431306 R tgttc AGGAGTTAGAAAGATTATT tcttc - 0 - 4.519 3431225-3431243 R cactg ACCAATCGCAAAGATTGCT aaggc - 0 - 2.242 3431246-3431262 R cccct CTGATTGACAGCATCAC tgacc - 0 -

Critical MAP values: p=0.01 6.66 p=0.05 5.31 p=0.1 4.59 p=0.2 3.95

Click here to go back