|
smp
|
| |
| Information
for smp, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
4620670-4621686
|
-
|
CDS
|
|
|
lipoate-protein ligase A
|
|
4621714-4622358
|
-
|
CDS
|
smp
|
|
orf; hypothetical protein
|
|
4622464-4623432
|
+
|
CDS
|
|
|
3-phosphoserine phosphatase
|
|
| |
Reported regulatory
sites for smp:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.846
|
4622377-4622398 R
|
attgc TTCTGGCAACATTAAGTCTCAA atttt
|
-
|
0
|
-
|
|
|
|
|
3.727
|
4622410-4622430 R
|
gggaa AATAACGCATGAGGCTACCTT gtatc
|
-
|
0
|
-
|
|
|
|
|
0.298
|
4622359-4622375 R
|
tcaaa TTTTCAAAGGGTGGAAG atggc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|