smpB
 
Information for smpB, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
2752309-2752785
-
CDS
orf; hypothetical protein
2752917-2753399
+
CDS
smpB
small protein B
2753509-2753974
+
misc_RNA
Small stable RNA; 10Sa RNA (nonribosomal) role in modulating DNA-binding proteins
 
Reported regulatory sites for smpB:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.086
2752881-2752904
gggtg TTTTCGATTTCAGATTACCGATGA ttcac
-
0
-
0.848
2752796-2752817
ctgct GTAAAAAAAACGCTATCCCGGC gctgg
-
0
-
0.829
2752836-2752854
gggtt CATGCTAAGATAGAGCCTT gtccc
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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