|
smtA
|
| |
| Information
for smtA, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
971845-972624
|
-
|
CDS
|
|
|
orf; hypothetical protein
|
|
972760-973545
|
+
|
CDS
|
smtA
|
|
S-adenosylmethionine-dependent methyltransferase
|
|
973542-974864
|
+
|
CDS
|
|
|
mukF protein (killing factor KICB)
|
|
| |
Reported regulatory
sites for smtA:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: PA SP ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.475
|
972628-972651
|
atcct TTCTGGTTCCTTTTTTAACCATAT agcaa
|
-
|
0
|
-
|
|
|
|
|
3.475
|
972691-972714
|
gttca TTCTCGCCGTGGCTGTGACAAAAT agcgt
|
-
|
0
|
-
|
|
|
|
|
2.961
|
972719-972735
|
tagcg TCTTTATCAGAAAACGT cttag
|
-
|
0
|
-
|
|
|
|
|
2.638
|
972674-972690
|
gatat TACACCAGACGGGTTCA ttctc
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
5.41
|
|
p=0.05
|
4.01
|
|
p=0.1
|
3.43
|
|
p=0.2
|
2.86
|
|
|