sodA
 
Information for sodA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4097072-4098106
-
CDS
rhamnose transport
4098391-4099011
+
CDS
sodA
superoxide dismutase; manganese
4099262-4100254
+
CDS
2-keto-3-deoxy-D-gluconate transport system
 
Reported regulatory sites for sodA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
4098304-4098361
arcA
negative response regulator of genes in aerobic pathways (sensors ArcB and CpxA)
4098285-4098320
fur
negative regulator
4098285-4098311
soxS
regulation of superoxide response regulon
 
Species with an ortholog: HI PA ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.571
4098294-4098314
tacgg CATTGATAATCATTTTCAATA tcatt
soxS
fur
arcA
18
21
11
-
5.571
4098315-4098335
caata TCATTTAATTAACTATAATGA accaa
fur
arcA
6
21
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.637
4098214-4098230
tactg GCAATCACGGCATTAAG tgggt
crp
rhaS
1
16
-
2.637
4098343-4098359
caact GCTTACGCGGCATTAAC aatcg
arcA
17
-
1.061
4098370-4098385
gccgc CCGACAATACTGGAGA tgaat
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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