speC
 
Information for speC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3103684-3104988
+
CDS
transport of nucleosides; permease protein
3105038-3107233
-
CDS
speC
ornithine decarboxylase isozyme
3107570-3108277
+
CDS
putative transport protein
 
Reported regulatory sites for speC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI ST EC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.426
3107281-3107303 R
acagt AAAATCAGAGCGTTTCTGCTTTT actga
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.856
3107246-3107262 R
ggtcg GAGCTGGTGACCAGTTT gaccc
-
0
-
2.713
3107425-3107440 R
ttctc CTCTCTGTACGGAGTT tgccc
-
0
-
 
Critical MAP values:
p=0.01
6.82
p=0.05
5.66
p=0.1
5.03
p=0.2
4.36

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