sspA
 
Information for sspA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3373914-3374411
-
CDS
stringent starvation protein B
3374417-3375055
-
CDS
sspA
regulator of transcription; stringent starvation protein A
3375450-3375842
-
CDS
30S ribosomal subunit protein S9
 
Reported regulatory sites for sspA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.299
3375393-3375416 R
ttcga AAAAACCCGCTTCGGCGGGTTTTT ttata
-
0
-
2.299
3375165-3375188 R
tgccc AAATGTCGGGTATTGCTCATTTTT tgttt
-
0
-
1.692
3375197-3375219 R
gcaaa ATCTGGTAAACTATCATCCAATT ttctg
-
0
-
1.383
3375057-3375073 R
tctga CTATACCTGGAGGTTTT catgg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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