Study
set genes
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Gene
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Annotation
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Known
TF sites
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malate synthase A
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aldehyde dehydrogenase; NAD-linked
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periplasmic L-asparaginase II
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L-ribulokinase
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low-affinity L-arabinose transport system proton symport protein
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L-arabinose-binding periplasmic protein
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involved in either transport or processing of arabinose polymers
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N-acetylglutamate synthase; amino acid acetyltransferase
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N-acetyl-gamma-glutamylphosphate reductase
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acetylornithine delta-aminotransferase
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argininosuccinate synthetase
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ornithine carbamoyltransferase 1
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repressor of arg regulon; cer-mediated site specific recombination
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3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase; tyrosine repressible)
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3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase; phenylalanine repressible)
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shikimate kinase II
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aromatic amino acid transport protein
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putative excinuclease subunit
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carbamoyl-phosphate synthetase; glutamine (small) subunit
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cytidine/deoxycytidine deaminase
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outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product
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cytosine permease/transport
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transcriptional regulator in 2-component system
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cyclic AMP receptor protein
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membrane protein required for colicin V production
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adenylate cyclase
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cytochrome d terminal oxidase; polypeptide subunit I
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cyn operon positive regulator
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positive transcriptional regulator for cysteine regulon
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cysteine synthase A; O-acetylserine sulfhydrolase A
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regulator for deo operon; udp; cdd; tsx; nupC; and nupG
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D-amino acid dehydrogenase subunit
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2-deoxyribose-5-phosphate aldolase
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probably ATP-dependent helicase
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damage-inducible protein I
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anaerobic dimethyl sulfoxide reductase subunit A
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global regulator; starvation conditions
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6-phosphogluconate dehydratase
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D-erythrose 4-phosphate dehydrogenase
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beta-hydroxydecanoyl thioester dehydrase; trans-2-decenoyl-ACP isomerase
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4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase
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acyl-CoA synthetase; long-chain-fatty-acid--CoA ligase
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transport of long-chain fatty acids; sensitivity to phage T2
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selenopolypeptide subunit of formate dehydrogenase H
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formate dehydrogenase-N; nitrate-inducible; alpha subunit
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outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D
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ferric enterobactin (enterochelin) binding protein; periplasmic component
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putative part of export apparatus for flagellar proteins
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regulator of flagellar biosynthesis; acting on class 2 operons; transcriptional initiation factor
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flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons
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flagellar biosynthesis
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probable formate transporter (formate channel 1)
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fumarate reductase; anaerobic; flavoprotein subunit
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PTS system; fructose-specific IIA/fpr component
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cell division protein
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fumarase C= fumarate hydratase Class II; isozyme
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negative regulator
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UDP-galactose-4-epimerase
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galactose-proton symport of transport system
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repressor of galETK operon
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mgl repressor; galactose operon inducer
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positive regulator of gcv operon
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aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system
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N-acetyl glucosamine-1-phosphate uridyltransferase
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glutamine synthetase
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periplasmic glutamine-binding protein; permease
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histidine protein kinase sensor for GlnG regulator (nitrogen regulator II; NRII)
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sn-glycerol-3-phosphate dehydrogenase (anaerobic); large subunit
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sn-glycerol-3-phosphate dehydrogenase (aerobic)
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facilitated diffusion of glycerol
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serine hydroxymethyltransferase
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IMP dehydrogenase
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DNA gyrase; subunit A; type II topoisomerase
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DNA-binding protein HLP-II (HU; BH2; HD; NS); pleiotropic regulator
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periplasmic serine protease Do; heat shock protein HtrA
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transcriptional repression of hyc and hyp operons
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probable small subunit of hydrogenase-3; iron-sulfur protein (part of formate hydrogenlyase (FHL) complex)
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repressor of aceBA operon
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acetolactate synthase I;valine-sensitive; large subunit
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ketol-acid reductoisomerase
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catalase; hydroperoxidase HPI(I)
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beta-D-galactosidase
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regulator for SOS(lexA) regulon
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periplasmic maltose-binding protein; substrate recognition for transport and chemotaxis
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maltodextrin phosphorylase
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alpha-amylase
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positive regulator of mal regulon
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PTS enzyme IIAB; mannose-specific
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multiple antibiotic resistance protein; repressor of mar operon
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alpha-galactosidase
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homoserine transsuccinylase
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cystathionine beta-lyase (beta-cystathionase)
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tetrahydropteroyltriglutamate methyltransferase
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5;10-methylenetetrahydrofolate reductase
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B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase; repressor of metE and metF
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repressor of all met genes but metF
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putative NAGC-like transcriptional regulator
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molybdopterin biosynthesis; protein A
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molybdate-binding periplasmic protein; permease
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PTS system; mannitol-specific enzyme IIABC components
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tryptophan-specific transport protein
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glucosamine-6-phosphate deaminase
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ferredoxin-type protein: electron transfer
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nitrate reductase 1; alpha subunit
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nitrite extrusion protein
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respiratory NADH dehydrogenase
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nitrite reductase (NAD(P)H) subunit
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periplasmic cytochrome c(552): plays a role in nitrite reduction
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transport of nucleosides; permease protein
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outer membrane protein 3a (II*;G;d)
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outer membrane protein 1b (Ib;c)
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outer membrane protein 1a (Ia;b;F)
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response regulator (sensor; EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis
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activator; hydrogen peroxide-inducible genes
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phosphoenolpyruvate carboxykinase
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transcriptional regulator for pyruvate dehydrogenase complex
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6-phosphofructokinase I
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ATP-binding component of phosphonate transport
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positive response regulator for pho regulon; sensor is PhoR (or CreC)
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outer membrane pore protein E (E;Ic;NmpAB)
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DNA polymerase II
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peptidyl-prolyl cis-trans isomerase A (rotamase A)
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phosphoenolpyruvate synthase
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low-affinity transport system; proline permease II
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high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein
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PTS system protein HPr
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adenylosuccinate synthetase
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phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase
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phosphoribosylaminoimidazole carboxylase = AIR carboxylase; catalytic subunit
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phosphoribosylaminoimidazolecarboxamideformyltransferase = AICAR formyltransferase; IMP cyclohydrolase
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phosphoribosylformyl-glycineamide synthetase = FGAM synthetase
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phosphoribosylaminoimidazole synthetase = AIR synthetase
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transcriptional repressor for pur regulon; glyA; glnB; prsA; speA
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phosphoribosylglycinamide formyltransferase 2
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pyruvate kinase I (formerly F); fructose stimulated
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dihydro-orotase
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dihydro-orotate dehydrogenase
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DNA strand exchange and renaturation; DNA-dependent ATPase; DNA- and ATP-dependent coprotease
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protein used in recombination and DNA repair
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positive regulator for rhaBAD operon
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rhamnose transport
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RNA polymerase; sigma(32) factor; regulation of proteins induced at high temperatures
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Holliday junction helicase subunit B; branch migration; repair
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superoxide dismutase; manganese
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regulation of superoxide response regulon
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PTS system; glucitol/sorbitol-specific IIC component; one of two
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suppressor of lon; inhibits cell division and ftsZ ring formation
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transcriptional activator of tdc operon
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tryptophanase
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energy transducer; uptake of iron; cyanocobalimin; sensitivity to phages; colicins
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trimethylamine N-oxide reductase; cytochrome c-type subunit
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anthranilate synthase component I
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regulator for trp operon and aroH; trp aporepressor
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nucleoside channel; receptor of phage T6 and colicin K
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tyrosine aminotransferase; tyrosine repressible
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tyrosine-specific transport system
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transcriptional regulation of aroF; aroG; tyrA and aromatic amino acid transport
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uridine phosphorylase
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sn-glycerol 3-phosphate transport system; periplasmic binding protein
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SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC
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excision nuclease subunit A
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DNA repair; excision nuclease subunit B
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DNA-dependent ATPase I and helicase II
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mannonate hydrolase
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orf; hypothetical protein
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glucose-6-phosphate dehydrogenase
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