Study set sorted by known TF-binding sites

Study set sorted by known TF-binding sites

TF	Annotation	Regulated genes
araC	transcriptional regulator for ara operon	araB, araE, araF, araJ
argR	repressor of arg regulon; cer-mediated site specific recombination	argA, argC, argD, argG, argI, argR, carA
carP	aminopeptidase A/I; alternate gene name pepA	carA
cpxR	transcriptional regulator in 2-component system	cpxR, htrA, ppiA
crp	cyclic AMP receptor protein	aldA, ansB, araB, araE, araF, araJ, cdd, crp, cyaA, cytR, dadA, deoC, flhD, fur, galE, gcvT, glpA, glpD, glpF, guaB, ilvB, lacZ, malE, malS, malT, manX, melA, mtlA, nagB, nupG, ompA, ompR, pckA, ppiA, proP, ptsH, rhaS, rhaT, rpoH, srlA, tdcA, tnaA, tsx, udp, uxuA
cspA	cold shock protein 7.4; transcriptional activator of hns	gyrA, hns
cynR	cyn operon positive regulator	cynR
cysB	positive transcriptional regulator for cysteine regulon	cysB, cysK
cytR	regulator for deo operon; udp; cdd; tsx; nupC; and nupG	cdd, cytR, deoC, nupG, ppiA, rpoH, tsx, udp
deoR	transcriptional repressor for deo operon; tsx; nupG	deoC
fabR	orf; hypothetical protein; alternate gene name yijC	fabA
fadR	negative regulator for fad regulon; and positive activator of fabA	fabA, fadB, fadD, fadL, iclR
fhlA	formate hydrogen-lyase transcriptional activator for fdhF; hyc and hyp operons	fdhF, hycA, hycB
flhCD	regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor	flhB, fliA, fliL
fnr	transcriptional regulation of aerobic; anaerobic respiration; osmotic balance	ansB, cydA, dmsA, fdnG, focA, napF, narG, narK, ndh, nirB, nrfA
fruR	transcriptional repressor of fru operon and others	aceB, edd, epd, fruB, mtlA, pckA, pfkA, ppsA, ptsH, pykF
fur	negative regulator	cirA, fepA, fepB, fur, sodA, tonB
galR	repressor of galETK operon	galE, galP, galR, galS
gcvA	positive regulator of gcv operon	gcvA, gcvT
glpR	repressor of the glp operon	glpA, glpD, glpF
iclR	repressor of aceBA operon	aceB, iclR
ilvY	positive regulator for ilvC	ilvC
lacI	transcriptional repressor of the lac operon	lacZ
lexA	regulator for SOS(lexA) regulon	b1741, dinG, dinI, ftsK, lexA, polB, recA, recN, ruvA, sulA, umuD, uvrA, uvrB, uvrD, yjiW
malT	positive regulator of mal regulon	malE, malP, malS
marA	multiple antibiotic resistance; transcriptional activator of defense systems	marR
marR	multiple antibiotic resistance protein; repressor of mar operon	marR
melR	regulator of melibiose operon	melA
metJ	repressor of all met genes but metF	metA, metC, metE, metF, metJ
metR	regulator for metE and metH	glyA, metA, metE, metF, metH
mlc	putative NAGC-like transcriptional regulator	malT, manX, mlc, ptsH
modE	molybdate uptake regulatory protein	dmsA, hycA, moaA, modA
nagC	transcriptional repressor of nag (N-acetylglucosamine) operon	glmU, nagB
narL	pleiotrophic regulation of anaerobic respiration: response regulator for nar; frd; dms and tor genes	dmsA, fdnG, focA, frdA, napF, narG, narK, nirB, nrfA
narP	nitrate/nitrite response regulator (sensor NarQ)	fdnG, napF, nirB, nrfA
ntrC	response regulator for gln (sensor glnL) (nitrogen regulator I; NRI); alternate gene name glnG	glnA, glnH, glnL
ompR	response regulator (sensor; EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis	fadL, flhD, ompC, ompF
oxyR	activator; hydrogen peroxide-inducible genes	dps, fur, katG, oxyR
pdhR	transcriptional regulator for pyruvate dehydrogenase complex	pdhR
phoB	positive response regulator for pho regulon; sensor is PhoR (or CreC)	phnC, phoB, phoE, pstS, ugpB
purR	transcriptional repressor for pur regulon; glyA; glnB; prsA; speA	carA, codB, cvpA, gcvT, glyA, guaB, purA, purC, purE, purH, purL, purM, purR, purT, pyrC, pyrD
rhaR	positive regulator for rhaRS operon	rhaS
rhaS	positive regulator for rhaBAD operon	rhaT
soxR	redox-sensing activator of soxS	soxS
soxS	regulation of superoxide response regulon	fumC, sodA, soxS, zwf
torR	response transcriptional regulator for torA (sensor TorS)	torC
trpR	regulator for trp operon and aroH; trp aporepressor	mtr, trpE, trpR
tyrR	transcriptional regulation of aroF; aroG; tyrA and aromatic amino acid transport	aroF, aroG, aroL, aroP, mtr, tyrB, tyrP, tyrR

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