thdF
 
Information for thdF, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3882705-3884351
+
CDS
60 KD inner-membrane protein
3884457-3885821
+
CDS
thdF
GTP-binding protein in thiophene and furan oxidation
3886064-3886138
+
CDS
tryptophanase leader peptide
 
Reported regulatory sites for thdF:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
5.410
3884374-3884397
aaaat AAGGGCGGTCAGTTGACCGCCTTT tttct
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.914
3884408-3884425
tttcg TAGGGCGGATAAGCACCG cgcat
-
0
REPv281 (18)
0.659
3884349-3884372
aatcc TGATTCGGTGAGTTTTCGCTAAAA taagg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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