thiC
 
Information for thiC, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4191147-4191782
-
CDS
thiamin biosynthesis; thiazole moiety
4191782-4193677
-
CDS
thiC
thiamin biosynthesis; pyrimidine moiety
4193910-4194386
-
CDS
putative transcriptional regulator
 
Reported regulatory sites for thiC:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
6.261
4193801-4193823 R
agacc GTTTATTCGGGATCCGCGGAACC tgatc
-
0
-
6.070
4193771-4193792 R
tcagg CTAATACCTGCGAAGGGAACAA gagtt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.170
4193702-4193718 R
catcc GTCGTCTGACAAGCCAC gtcct
-
0
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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