thrA
 
Information for thrA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
190-255
+
CDS
thr operon leader peptide
337-2799
+
CDS
thrA
aspartokinase I; homoserine dehydrogenase I
2801-3733
+
CDS
homoserine kinase
 
Reported regulatory sites for thrA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
225-247
Neidhardt (2nd edition) E.coli and Salmonella
stem-loop
attenuator
 
Species with an ortholog: HI SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.997
275-290
acaga AAAAAGCCCGCACCTG acagt
-
0
-
4.997
291-306
acctg ACAGTGCGGGCTTTTT ttttc
-
0
-
4.440
226-246
ccatc ACCATTACCACAGGTAACGGT gcggg
stem-loop
21
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.202
247-269
acggt GCGGGCTGACGCGTACAGGAAAC acaga
stem-loop
1
-
 
Critical MAP values:
p=0.01
5.41
p=0.05
4.01
p=0.1
3.43
p=0.2
2.86

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