tnaA
 
Information for tnaA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3886064-3886138
+
CDS
tryptophanase leader peptide
3886344-3887774
+
CDS
tnaA
tryptophanase
3887865-3889112
+
CDS
low affinity tryptophan permease
 
Reported regulatory sites for tnaA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
3885970-3885991
crp
cyclic AMP receptor protein
 
Species with an ortholog: EC VC
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.545
3886240-3886263
ctctc GTTTATTTACTTGTTTTAGTAAAT gatgg
-
0
-
3.512
3885901-3885917
ccctt TTTTTAAACATTAAAAT tctta
-
0
-
3.512
3885928-3885944
cgtaa TTTATAATCTTTAAAAA aagca
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
0.939
3886102-3886121
tggtt CAATATTGACAACAAAATTG tcgat
-
0
-
-
 
Critical MAP values:
p=0.01
3.34
p=0.05
2.41
p=0.1
2.01
p=0.2
1.55

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