topA
 
Information for topA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1328441-1328692
-
CDS
orf; hypothetical protein
1329072-1331669
+
CDS
topA
DNA topoisomerase type I; omega protein
1331879-1332853
+
CDS
positive transcriptional regulator for cysteine regulon
 
Reported regulatory sites for topA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.144
1328799-1328817
tgcat GCTAATAAAGTTGCGTATC ggatt
-
0
-
1.921
1328829-1328849
tatca GGTACAGTGTGACGCTTTCGT caatc
-
0
-
1.921
1329024-1329044
ggttt ATCAACGTGCGACGCATTCCT ggaag
-
0
-
1.563
1328696-1328717
attat TTACTCCTTAAACAAGGACATT agtct
-
0
-
1.563
1329050-1329071
ggaag AATCAAATTAGGTAAGGTGAAT atggg
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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