trmA
 
Information for trmA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
4159350-4159709
+
CDS
orf; hypothetical protein
4159749-4160849
-
CDS
trmA
tRNA (uracil-5-)-methyltransferase
4161218-4163062
+
CDS
outer membrane receptor for transport of vitamin B12; E colicins; and bacteriophage BF23
 
Reported regulatory sites for trmA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
4.127
4160992-4161012 R
cagat TCGCACTGGATTCCCTATTAA ctcac
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.132
4161128-4161144 R
atgcg ACGTTGGCCGGCAGGTC ttcgg
-
0
-
3.132
4161018-4161034 R
cctta CCGCTGCGCGTCAGCTC cagat
-
0
-
1.719
4161174-4161190 R
aagga TGCCGCAGGTTTCATCA atatt
-
0
-
1.719
4160954-4160970 R
gtgga TGCTACAGGTTGTAACA agtta
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

Click here to go back