uspA
 
Information for uspA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
3637015-3637350
-
CDS
orf; hypothetical protein
3637741-3638175
+
CDS
uspA
universal stress protein; broad regulatory function?
3638492-3639961
+
CDS
putative transport protein
 
Reported regulatory sites for uspA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
3637609-3637625
fadR
negative regulator for fad regulon and positive activator of fabA
3637700-3637718
fadR
negative regulator for fad regulon and positive activator of fabA
 
Species with an ortholog: HI ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
3.320
3637371-3637391
acctg CCCGCGGAGTTCCACCCCGGG gctac
-
0
-
3.320
3637648-3637668
ttagc CCCGCGCACGTAGTTCGCAGG acgcg
-
0
-
3.231
3637503-3637525
gttgt TTTTTTTCCAGAAGGTTAACCAC tatca
-
0
-
3.231
3637550-3637572
aaaat TTGTTTATCTAACGAGTAAGCAA ggcgg
-
0
-
1.588
3637596-3637612
ccggg TCGCTATAAGGTAAGGA tggtc
fadR
4
-
 
Critical MAP values:
p=0.01
6.03
p=0.05
4.63
p=0.1
3.98
p=0.2
3.37

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