xthA
 
Information for xthA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
1828786-1830006
-
CDS
acetylornithine delta-aminotransferase
1830452-1831258
+
CDS
xthA
exonuclease III
1831377-1832135
+
CDS
orf; hypothetical protein
 
Reported regulatory sites for xthA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: HI PA SP ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
1.878
1830059-1830077
taatg TTTGCGCTGTAAATGTAGA ttgca
-
0
-
1.878
1830159-1830177
aacca TATGCATTTAAAGTGCATA taaag
-
0
-
1.727
1830247-1830263
taaaa TATAATTCTGGAATTGT gatca
-
0
-
1.727
1830275-1830291
tgacg AAATTTACTGGAAATTA ctgcg
-
0
-
1.710
1830020-1830039
ctaca GTAAATAATTCGTTATTTAT atgtt
-
0
-
 
Critical MAP values:
p=0.01
4.80
p=0.05
3.45
p=0.1
2.95
p=0.2
2.42

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