|
yabM
|
| |
| Information
for yabM, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
75644-77299
|
-
|
CDS
|
|
|
putative transport protein
|
|
77621-78799
|
+
|
CDS
|
yabM
|
|
putative transport protein
|
|
78848-79453
|
-
|
CDS
|
|
|
isopropylmalate isomerase subunit
|
|
| |
Reported regulatory
sites for yabM:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.545
|
77345-77367
|
cccta TATTAAGTCAATAATTCCTAACG atgaa
|
-
|
0
|
-
|
|
|
|
|
0.698
|
77367-77390
|
ctaac GATGAAGCAAGGGGGTGCCCCATG cgtca
|
-
|
0
|
-
|
|
|
|
|
0.604
|
77557-77576
|
gtaaa ATCACCCGCCAGCAGATTAT acctg
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|