|
yadD
|
| |
| Information
for yadD, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
146314-146694
|
-
|
CDS
|
|
|
aspartate 1-decarboxylase
|
|
146968-147870
|
+
|
CDS
|
yadD
|
|
orf; hypothetical protein
|
|
147944-148795
|
-
|
CDS
|
|
|
pantothenate synthetase
|
|
| |
Reported regulatory
sites for yadD:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
1.321
|
146725-146743
|
taacg AAGCAGGCGATGCCTGCTT tgagg
|
-
|
0
|
-
|
|
|
|
|
1.025
|
146756-146771
|
attct CACGCAGTATTGCCCG atttt
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.59
|
|
p=0.05
|
6.45
|
|
p=0.1
|
5.76
|
|
p=0.2
|
5.04
|
|
|