|
yadQ
|
| |
| Information
for yadQ, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
173602-174882
|
-
|
CDS
|
|
|
glutamate-1-semialdehyde aminotransferase (aminomutase)
|
|
175107-176528
|
+
|
CDS
|
yadQ
|
|
putative channel transporter
|
|
176610-176954
|
+
|
CDS
|
|
|
orf; hypothetical protein
|
|
| |
Reported regulatory
sites for yadQ:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC VC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.513
|
175025-175045
|
gaaac ATTACGCTTTGCAAAGGATTT tcatg
|
-
|
0
|
-
|
|
|
|
|
3.089
|
175004-175027
|
gtata AAAGTTTTGTGCATTTGAAACATT acgct
|
-
|
0
|
-
|
|
|
|
|
2.999
|
175078-175094
|
catct TATTTGTATGACCAATA agtga
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.66
|
|
p=0.05
|
5.31
|
|
p=0.1
|
4.59
|
|
p=0.2
|
3.95
|
|
|