yafA
 
Information for yafA, and also upstream and downstream flanking genes:
Genome coordinates
Orientation
Gene type
Name
EcoGene
Annotation
255977-256435
+
CDS
guanine-hypoxanthine phosphoribosyltransferase
256527-257771
+
CDS
yafA
orf; hypothetical protein
257829-258230
+
CDS
transcriptional regulator of cryptic csgA gene for curli surface fibers
 
Reported regulatory sites for yafA:
Genome coordinates
Source
Transcription factor
Transcription factor annotation
 
Species with an ortholog: ST EC VC YP
 
Predictions with an average map value >= the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
7.443
256445-256463
ttcaa CGCCTGGCACTGCCGGGCG ttgtt
-
0
-
 
Predictions with an average map value < the critical MAP value (p=0.05):
Avg. MAP
Genome coordinates
Sequence
Site type
Overlap (bp)
Repeat
Model logo
Prediction logo
Prediction alignment
2.039
256496-256519
caata GTTTCCAGTAAGTATTCTGGAGGC tgcat
-
0
-
0.450
256474-256495
ctttt TAACTTCAGGCGGGTTACAATA gtttc
-
0
-
 
Critical MAP values:
p=0.01
6.66
p=0.05
5.31
p=0.1
4.59
p=0.2
3.95

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