|
yafM
|
| |
| Information
for yafM, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
246712-247461
|
+
|
CDS
|
|
|
putative lipoprotein
|
|
247637-248134
|
+
|
CDS
|
yafM
|
|
orf; hypothetical protein
|
|
248358-250097
|
-
|
CDS
|
|
|
flagellar biosynthesis
|
|
| |
Reported regulatory
sites for yafM:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: HI PA ST EC |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
2.194
|
247461-247483
|
ttgta GGACGGATAAGGCGTTTACGCCG catcc
|
-
|
0
|
REP18a (23)
|
|
|
|
|
0.359
|
247558-247574
|
tattt GCGAGCCGCTTTCCCGA tataa
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
6.09
|
|
p=0.05
|
4.94
|
|
p=0.1
|
4.37
|
|
p=0.2
|
3.74
|
|
|