|
ybaJ
|
| |
| Information
for ybaJ, and also upstream and downstream flanking genes: |
|
Genome
coordinates
|
Orientation
|
Gene
type
|
Name
|
EcoGene
|
Annotation
|
|
479314-479532
|
-
|
CDS
|
|
|
haemolysin expression modulating protein
|
|
479558-479932
|
-
|
CDS
|
ybaJ
|
|
orf; hypothetical protein
|
|
480478-483627
|
-
|
CDS
|
|
|
acridine efflux pump
|
|
| |
Reported regulatory
sites for ybaJ:
|
Genome
coordinates
|
Source
|
Transcription
factor
|
Transcription
factor annotation
|
|
| |
| Species with
an ortholog: ST EC YP |
| |
Predictions
with an average map value >= the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
| |
Predictions
with an average map value < the critical MAP value (p=0.05):
|
Avg.
MAP
|
Genome
coordinates
|
Sequence
|
Site
type
|
Overlap
(bp)
|
Repeat
|
Model
logo
|
Prediction
logo
|
Prediction
alignment
|
|
3.084
|
480156-480174 R
|
cgata ATCCTGAAATGTTATGAAT agttc
|
-
|
0
|
-
|
|
|
|
|
3.084
|
480061-480079 R
|
ttcct AATTGTAATTTTTCGTAAT aatgc
|
-
|
0
|
-
|
|
|
|
|
2.370
|
480016-480032 R
|
gtggc TTATAGTTAAGCTAACA aacga
|
-
|
0
|
-
|
|
|
|
|
1.267
|
480284-480300 R
|
tagat TTAATAATCCATAATCA tttag
|
-
|
0
|
-
|
|
|
|
|
1.267
|
480217-480233 R
|
ctcgg TTATTACGTCATATTCA gagca
|
-
|
0
|
-
|
|
|
|
|
| |
Critical
MAP values:
|
p=0.01
|
7.30
|
|
p=0.05
|
6.05
|
|
p=0.1
|
5.26
|
|
p=0.2
|
4.60
|
|
|